PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_40515
Common NameKK1_042587
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YB
Protein Properties Length: 179aa    MW: 19717.1 Da    PI: 6.9127
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_40515genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB186.91.5e-5823118297
          NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                    reqdrflPianvsrimkk+lPanakisk+aketvqecvsefisf+t+easdkcq+ekrktingddllwa++tlGfe+yveplk+yl+kyre+egek
  C.cajan_40515  23 REQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKIYLHKYREMEGEK 118
                    89********************************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-5520129IPR009072Histone-fold
SuperFamilySSF471134.97E-4225128IPR009072Histone-fold
PfamPF008083.7E-282892IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.3E-215674No hitNo description
PROSITE patternPS0068505975IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.3E-217593No hitNo description
PRINTSPR006152.3E-2194112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MAESDNESGG QPGNASNEFS GCREQDRFLP IANVSRIMKK ALPANAKISK EAKETVQECV  60
SEFISFITGE ASDKCQKEKR KTINGDDLLW AMTTLGFEEY VEPLKIYLHK YREMEGEKTA  120
MMGRPQGERE DGYAHGHGHG HGHGHAHGGV VPSPMMMMVG HQQHQGHVYG SGTGSSRTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-4923113292Transcription factor HapC (Eurofung)
4g92_B4e-4923113292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-119AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517914.12e-95PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233101e-72NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A151R1B11e-133A0A151R1B1_CAJCA; Nuclear transcription factor Y subunit B-3
STRINGGLYMA09G01650.18e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-73nuclear factor Y, subunit B3